• Alpha&ESM hFolds -A database for the comparison of structural models predicted by ESMFold and AlphaFold2 for the human proteome.

• BaCelLo - Balanced subCellular Localization predictor

• BAR 3.0- Bologna Annotation Resource (v.3)

• BAR+ - Bologna Annotation Resource (v.2)

• BENZ WS - Bologna ENZyme Web Server

• BetAware - Detection and topology prediction of Prokaryotic outer-membrane beta-barrel proteins

• Bioinformatic Sweeties - A suite of user-friendly bioinformatic tools for characterizing proteins and their variants.

• BetAware-Deep - Detection and topology prediction of Prokaryotic outer-membrane beta-barrel proteins with Deep learning

• BUSCA - Prediction of protein sub-cellular localization intergrating different tools/predictors

• CCHMM - Predictor of Coiled-Coils Regions in Proteins

• CCHMMPROF - Predictor of Coiled-Coils Regions in Proteins exploiting evolutionary information

• CoCoNat - Predictor of Coiled-Coils Regions in Proteins exploiting protein language models

• CORNET - Predictor of Residue Contacts in Proteins

• DAR - Disease and Rectome database

• DCON - Predictor of Disulfide Connectivity in Proteins

• DeepREx - A Deep-learning based method for the prediction of Residue solvent Exposure starting from protein sequence

• DeepSig - Prediction of signal peptides based on deep learning

• DeepMito - Prediction of sub-mitochondrial localization based on deep learning

• DisLocate - Finding Disulfide bonds in Eukaryotes with predicted subcellular Localization

• E-pRSA - Embeddings improve the prediction of residue Relative Solvent Accessibility in protein sequence

E-SNPs&GO - Prediction of variant pathogenicity with embeddings

• FT-COMAR - Fault Tolerance Reconstruction of 3D Structure from Protein Contact Maps

• HIPPIE - Protease Inhibitor engine

• I-MUTANT 2.0 - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure

• I-MUTANT Suite - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure (three states) and of human Deleterious Single Nucleotide Polymorphysms

• INPS-MD - Impact of Non-synonymous mutations on Protein Stability - Multi Dimension: predictor of protein stability change upon single point mutation using protein sequence or 3D structure

• ISPRED4 - Predictor of Protein Interaction Sites starting from structure

• ISPRED-SEQ - Predictor of Protein Interaction Sites starting from sequence

• K-Fold - Predictor of the Protein Folding Mechanism and Rate

• MemLoci - Subcellular Localization Predictor for Membrane Proteins

• MemPype - A pipeline for predicting the topology and the localization of membrane proteins

• NET-GE - Network-based gene enrichment

• NETGE-PLUS - Network-based gene enrichment

• PhD-SNP - Support Vector Machines based Predictor of human Deleterious Single Nucleotide Polymorphysms

• PhenPath - Database and tool for Phenotype-Disease-Gene Associations

• PredGPI - Predictor of GPI-Anchored Proteins

• SChloro - Predictor of protein sub-chloroplastic localization

• SNPs&GO - Predictor of Human Disease-related Mutations in Proteins with Functional Annotations

• SPEPLip - Predictor of Signal Peptide and Lipoprotein Cleavage Sites in Proteins

• SVMyr - Prediction of protein G-myristoylation sites

• TPpred - Predictor of Organelle Targeting Peptides

• TPpred2 - Predictor of Mitochondrial-Targeting Signals in Proteins

• TPpred3 - Predictor of Mitochondrial and Chloroplastic Targeting Peptides in Proteins

• YAP - Yet Another Alignment Program (Pairwise Sequence Alignment Using Secondary Structures)

• prototypes and old predictors

• TRAMPLE: the transmembrane protein labelling environment

• PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

• Alpha&ESM hFolds A database for the comparison of structural models predicted by ESMFold and AlphaFold2 for 42,942 human proteins
• eDGAR a database of Disease-Gene Associations with annotated Relationships
• eSLDB - eukaryotic Subcellular Localization DataBase
• PhenPath - Database and tool for Phenotype-Disease-Gene Associations
• ZenPatches - Database of predicted protein interaction sites
• DBMFHS - Data Base of Minimally-Frustrated Helical Segments