Predictors
  • BaCelLo - Balanced subCellular Localization predictor
  • BAR+ - Bologna Annotation Resource
  • BetAware - Detection and topology prediction of Prokaryotic outer-membrane betabarrel proteins
  • CCHMM - Predictor of Coiled-Coils Regions in Proteins
  • CCHMMPROF - Predictor of Coiled-Coils Regions in Proteins exploiting evolutionary information
  • CORNET - Predictor of Residue Contacts in Proteins
  • DCON - Predictor of Disulfide Connectivity in Proteins
  • DisLocate - Find Disulfide bonds in Eukaryotes with predicted subcellular Localization
  • FT-COMAR - Fault Tolerance Reconstruction of 3D Structure from Protein Contact Maps
  • HIPPIE - Protease Inhibitor engine
  • I-MUTANT 2.0 - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure
  • I-MUTANT Suite - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure (three states) and of human Deleterious Single Nucleotide Polymorphysms
  • INPS-MD - Impact of Non-synonymous mutations on Protein Stability - Multi Dimension: predictor of protein stability change upon single point mutation using protein sequence or 3D structure
  • ISPRED - Predictor of Protein Interaction Sites
  • K-Fold - Predictor of the Protein Folding Mechanism and Rate
  • MemLoci - Subcellular Localization Predictor for Membrane Proteins
  • MemPype - A pipeline for predicting the topology and the localization of membrane proteins
  • NET-GE - Network-based gene enrichment
  • PhD-SNP - Support Vector Machines based Predictor of human Deleterious Single Nucleotide Polymorphysms
  • PredGPI - Predictor of GPI-Anchored Proteins
  • SChloro - Predictor of protein sub-chloroplastic localization
  • SNPs&GO - Predictor of Human Disease-related Mutations in Proteins with Functional Annotations
  • SPEPLip - Predictor of Signal Peptide and Lipoprotein Cleavage Sites in Proteins
  • TPpred - Predictor of Organelle Targeting Peptides
  • TPpred2 - Predictor of Mitochondrial-Targeting Signals in Proteins
  • TPpred3 - Predictor of Mitochondrial and Chloroplastic Targeting Peptides in Proteins
  • YAP - Yet Another Alignment Program (Pairwise Sequence Alignment Using Secondary Structures)
Application Servers
  • TRAMPLE: the transmembrane protein labelling environment
  • PONGO: a web server for multiple predictions of all-alpha transmembrane proteins
Databases
  • eSLDB - eukaryotic Subcellular Localization DataBase
  • ZenPatches - Database of predicted protein interaction sites
  • DBMFHS - Data Base of Minimally-Frustrated Helical Segments