Predictors
  • BaCelLo - Balanced subCellular Localization predictor
  • BAR 3.0- Bologna Annotation Resource (v.3)
  • BAR+ - Bologna Annotation Resource (v.2)
  • BetAware - Detection and topology prediction of Prokaryotic outer-membrane beta-barrel proteins
    • BetAware-Deep - Detection and topology prediction of Prokaryotic outer-membrane beta-barrel proteins with Deep learning
    • BUSCA - Prediction of protein sub-cellular localization intergrating different tools/predictors
    • CCHMM - Predictor of Coiled-Coils Regions in Proteins
    • CCHMMPROF - Predictor of Coiled-Coils Regions in Proteins exploiting evolutionary information
    • CORNET - Predictor of Residue Contacts in Proteins
    • DCON - Predictor of Disulfide Connectivity in Proteins
    • DeepSig - Prediction of signal peptides based on deep learning
    • DeepMito - Prediction of sub-mitochondrial localization based on deep learning
    • DisLocate - Find Disulfide bonds in Eukaryotes with predicted subcellular Localization
    • FT-COMAR - Fault Tolerance Reconstruction of 3D Structure from Protein Contact Maps
    • HIPPIE - Protease Inhibitor engine
    • I-MUTANT 2.0 - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure
    • I-MUTANT Suite - Support Vector Machines based Predictor of Protein stability Changes upon Single Point Mutation from the Protein Sequence and Structure (three states) and of human Deleterious Single Nucleotide Polymorphysms
    • INPS-MD - Impact of Non-synonymous mutations on Protein Stability - Multi Dimension: predictor of protein stability change upon single point mutation using protein sequence or 3D structure
    • ISPRED - Predictor of Protein Interaction Sites
    • K-Fold - Predictor of the Protein Folding Mechanism and Rate
    • MemLoci - Subcellular Localization Predictor for Membrane Proteins
    • MemPype - A pipeline for predicting the topology and the localization of membrane proteins
    • NET-GE - Network-based gene enrichment
    • PhD-SNP - Support Vector Machines based Predictor of human Deleterious Single Nucleotide Polymorphysms
    • PhenPath - Database and tool for Phenotype-Disease-Gene Associations
    • PredGPI - Predictor of GPI-Anchored Proteins
    • SChloro - Predictor of protein sub-chloroplastic localization
    • SNPs&GO - Predictor of Human Disease-related Mutations in Proteins with Functional Annotations
    • SPEPLip - Predictor of Signal Peptide and Lipoprotein Cleavage Sites in Proteins
    • TPpred - Predictor of Organelle Targeting Peptides
    • TPpred2 - Predictor of Mitochondrial-Targeting Signals in Proteins
    • TPpred3 - Predictor of Mitochondrial and Chloroplastic Targeting Peptides in Proteins
    • YAP - Yet Another Alignment Program (Pairwise Sequence Alignment Using Secondary Structures)
Application Servers
  • TRAMPLE: the transmembrane protein labelling environment
  • PONGO: a web server for multiple predictions of all-alpha transmembrane proteins
Databases
  • eDGAR a database of Disease-Gene Associations with annotated Relationships
  • eSLDB - eukaryotic Subcellular Localization DataBase
  • PhenPath - Database and tool for Phenotype-Disease-Gene Associations
  • ZenPatches - Database of predicted protein interaction sites
  • DBMFHS - Data Base of Minimally-Frustrated Helical Segments